Glossary

Jump to: A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  R  S  T  U  V 

A

 Adaptive immune system  |  Affinity maturation  |  AMINO_ACID  |  Amplification (amp) factor  |  ANTIBODY  |  antigen_type

B

 B-cell receptor (BCR)  |  Barcode  |  Bias and bias control  |  BIO_IDENTITY

C

 CDR (Complementary Determining Region)  |  cdr1_amino_acid  |  cdr1_rearrangement  |  cdr1_rearrangement_length  |  cdr1_start_index  |  cdr2_amino_acid  |  cdr2_rearrangement  |  cdr2_rearrangement_length  |  cdr2_start_index  |  CDR3  |  cdr3_amino_acid  |  CDR3_LENGTH  |  cdr3_rearrangement  |  cdr3_rearrangement_length  |  cdr3_start_index  |  chosen_j_allele  |  chosen_j_family  |  chosen_j_gene  |  chosen_v_allele  |  chosen_v_family  |  chosen_v_gene  |  Clonal expansion  |  Clonality  |  Clone  |  Clone tracker  |  clonoSEQ  |  Clonotype  |  Clustering  |  Concentration  |  Constant (C) gene segment  |  Correlation  |  COUNTING_METHOD  |  Coverage

D

 D3_DELETION_COUNT  |  D5_DELETION_COUNT  |  D_ALLELE  |  D_ALLELE_TIES  |  D_FAMILY  |  D_FAMILY_TIES  |  D_GENE  |  D_GENE_TIES  |  D_START_INDEX  |  Deep resolution  |  Deletion  |  Diversity  |  DJ  |  DJ_READS  |  DJ_REARRANGEMENTS  |  DJ_TEMPLATES

E

 ensembl_ensg_id  |  Entropy  |  Expanded clone  |  extended_rearrangement  |  Extraction

F

 Fraction nucleated  |  FRACTION_OF_PRODUCTIVE  |  FRACTION_OF_TEMPLATES  |  FRACTION_PRODUCTIVE_TEMPLATES  |  FRACTION_TEMPLATES  |  FRACTION_TEMPLATES_MASS_ESTIMATE  |  FRAME_TYPE  |  Framework region (FR)  |  Frequency

G

 gene  |  gene_hgnc_id  |  gene_mutation

H

 HLA_CLASS_I  |  HLA_CLASS_II

I

 Immune repertoire  |  Immunoglobulin H assay  |  Immunoglobulin KL assay  |  immunoSEQ  |  Immunosequencing  |  Input template estimate  |  Insertion

J

 J_ALLELE  |  J_ALLELE_TIES  |  J_DELETION_COUNT  |  J_FAMILY  |  J_FAMILY_TIES  |  J_GENE  |  J_GENE_TIES  |  J_INDEX  |  Joining (J) gene segment

K

 KIT_ID  |  KIT_POOL

L

 Library  |  likely_hla_restriction  |  LOCUS

M

 Max depth resolution  |  MAX_FRACTION_OF_PRODUCTIVE  |  MAX_FRACTION_OF_TEMPLATES  |  MAX_RESOLVED_D  |  MAX_RESOLVED_J  |  MAX_RESOLVED_V  |  Minimal residual disease (MRD)  |  Monoclonal  |  Multiplex PCR  |  mutation

N

 N region  |  N1_INSERTION_COUNT  |  N1_START_INDEX  |  N2_INSERTION_COUNT  |  N2_START_INDEX  |  NONHUMAN_NCBI_REF_ID  |  NORMALIZED_READS

O

 Oligoclonal  |  On-target (%)  |  ORDER_NAME  |  Orphon  |  OUT_OF_FRAME_READS  |  OUT_OF_FRAME_REARRANGEMENTS  |  OUT_OF_FRAME_TEMPLATES  |  Overlap

P

 Palindromic nucleotides  |  peptide_disease  |  peptide_properties  |  peptide_seq  |  Polyclonal  |  PRESENT_IN  |  PRIMER_SET  |  Private clone  |  PRODUCT_TYPE  |  Productive read  |  PRODUCTIVE_CLONALITY  |  PRODUCTIVE_ENTROPY  |  PRODUCTIVE_READS  |  PRODUCTIVE_REARRANGEMENTS  |  PRODUCTIVE_SIMPSON_CLONALITY  |  PRODUCTIVE_TEMPLATES  |  protein_id  |  protein_properties  |  Public clone

R

 RANK  |  REARRANGEMENT  |  REARRANGEMENT_TRUNC  |  REARRANGEMENT_TYPE  |  Recombination  |  RELEASE_DATE  |  Replicate  |  Resolution  |  Resolved (or max resolved)

S

 SAMPLE_AMOUNT  |  SAMPLE_CATALOG_TAGS  |  SAMPLE_CELLS  |  SAMPLE_CELLS_MASS_ESTIMATE  |  SAMPLE_ID  |  SAMPLE_NAME  |  SAMPLE_PUBLISHED_PROJECTS_JSON  |  SAMPLE_RICH_TAGS  |  SAMPLE_RICH_TAGS_JSON  |  SAMPLE_TAGS  |  SEQUENCE_RESULT_ID  |  SEQUENCE_RESULT_STATUS  |  SEQUENCE_TAGS  |  SKU  |  Somatic hypermutation (SHM)  |  SPECIES  |  STOP_READS  |  STOP_REARRANGEMENTS  |  STOP_TEMPLATES  |  Survey resolution

T

 T-cell receptor (TCR)  |  T-cell receptor beta assay  |  T-cell receptor gamma assay  |  Tag  |  taxon_id  |  taxon_name  |  TEMPLATES  |  TEST_NAME  |  TOTAL_CLONALITY  |  TOTAL_ENTROPY  |  TOTAL_READS  |  TOTAL_REARRANGEMENTS  |  TOTAL_SIMPSON_CLONALITY  |  TOTAL_TCELLS  |  TOTAL_TEMPLATES  |  TOTAL_TEMPLATES_AGGREGATE  |  TSV File (.tsv)  |  Tumor-infiltrating lymphocyte (TIL)

U

 Ultra Deep resolution  |  Union table  |  uniprot_id  |  Unique read  |  UNIQUE_COUNTS  |  unmod_peptide_seq  |  Unproductive read  |  UPLOAD_DATE

V

 V Mark  |  V(D)J  |  V_ALLELE  |  V_ALLELE_TIES  |  V_DELETION_COUNT  |  V_FAMILY  |  V_FAMILY_TIES  |  V_GENE  |  V_GENE_TIES  |  V_INDEX  |  V_SHM_COUNT  |  V_SHM_INDEXES_CSV  |  Variable (V) gene segment  |  VJ